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MDR769 HIV-1 protease complexed with PR/RT hepta-peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.8 298 0.8M NaCl
01 M MES
, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.38 48.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.621 α = 90 b = 45.621 β = 90 c = 102.101 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 173 CCD MARMOSAIC 300 mm CCD 2008-08-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 1.0332 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 46.67 98.3 22908 22519 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.76 97.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 41.67 21736 21376 1140 98.34 0.19326 0.19495 0.19326 0.191 0.22634 0.2225 RANDOM 21.977
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.364 r_dihedral_angle_4_deg 13.529 r_dihedral_angle_3_deg 11.76 r_dihedral_angle_1_deg 6.187 r_scangle_it 4.351 r_scbond_it 2.665 r_mcangle_it 1.645 r_angle_refined_deg 1.439 r_mcbond_it 1.366 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.364 r_dihedral_angle_4_deg 13.529 r_dihedral_angle_3_deg 11.76 r_dihedral_angle_1_deg 6.187 r_scangle_it 4.351 r_scbond_it 2.665 r_mcangle_it 1.645 r_angle_refined_deg 1.439 r_mcbond_it 1.366 r_nbtor_refined 0.312 r_symmetry_vdw_refined 0.239 r_nbd_refined 0.221 r_xyhbond_nbd_refined 0.146 r_symmetry_hbond_refined 0.102 r_chiral_restr 0.089 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1569 Nucleic Acid Atoms Solvent Atoms 247 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection AMoRE phasing REFMAC refinement CrystalClear data reduction CrystalClear data scaling