☰ Navigation Tabs
Structure and mechanisim of core 2 beta1,6-n-acetylglucosaminyltransferase: a Metal-ion independent gt-a glycosyltransferase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 296 22% polyethylene glycol 4000, 0.15 M glycine pH 9.0, 0.6 M LiCl, 1.5% 1,2,3 heptanetriol, 25 mM UDP-GlcNAc, VAPOR DIFFUSION, HANGING DROP, temperature 296K
Crystal Properties Matthews coefficient Solvent content 2.81 56.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.874 α = 90 b = 101.02 β = 93.42 c = 136.612 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2007-06-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE A1 0.9771 CHESS A1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 93.2 0.134 0.116 10.6 3.7 100602 93761 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.21 2.29 74.6 0.587 0.676 2.1 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 50 84572 80656 4289 95.37 0.16806 0.16528 0.21926 0.222 RANDOM 43.771
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.54 1.05 -1.8 3.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.334 r_scangle_it 19.005 r_dihedral_angle_4_deg 17.594 r_dihedral_angle_3_deg 14.852 r_scbond_it 14.092 r_dihedral_angle_1_deg 5.258 r_mcangle_it 2.599 r_angle_refined_deg 1.172 r_mcbond_it 1.02 r_nbtor_refined 0.323
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.334 r_scangle_it 19.005 r_dihedral_angle_4_deg 17.594 r_dihedral_angle_3_deg 14.852 r_scbond_it 14.092 r_dihedral_angle_1_deg 5.258 r_mcangle_it 2.599 r_angle_refined_deg 1.172 r_mcbond_it 1.02 r_nbtor_refined 0.323 r_nbd_refined 0.22 r_symmetry_hbond_refined 0.188 r_symmetry_vdw_refined 0.181 r_xyhbond_nbd_refined 0.175 r_metal_ion_refined 0.112 r_chiral_restr 0.081 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11832 Nucleic Acid Atoms Solvent Atoms 533 Heterogen Atoms 254
Software Software Software Name Purpose ADSC data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling