☰ Navigation Tabs
Mycobacterium tuberculosis PknB kinase domain L33D mutant (crystal form 4)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MRU PDB entry 1mru
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 277 1M Sodium Citrate, 100mM CHES pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.11 41.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.598 α = 90 b = 51.423 β = 90 c = 135.327 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2003-06-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.107 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 98.6 0.055 13.5 3.3 21540
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 94.8 0.213 5.2 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1mru 1.9 17.46 21540 1161 98.4 0.19474 0.19296 0.22758 0.2534 RANDOM 27.779
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.12 0.18 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.988 r_dihedral_angle_3_deg 13.28 r_dihedral_angle_4_deg 12.875 r_dihedral_angle_1_deg 5.046 r_scangle_it 2.056 r_angle_refined_deg 1.518 r_scbond_it 1.415 r_mcangle_it 0.804 r_angle_other_deg 0.744 r_mcbond_it 0.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.988 r_dihedral_angle_3_deg 13.28 r_dihedral_angle_4_deg 12.875 r_dihedral_angle_1_deg 5.046 r_scangle_it 2.056 r_angle_refined_deg 1.518 r_scbond_it 1.415 r_mcangle_it 0.804 r_angle_other_deg 0.744 r_mcbond_it 0.71 r_nbd_refined 0.203 r_symmetry_vdw_other 0.191 r_xyhbond_nbd_refined 0.184 r_nbtor_refined 0.171 r_symmetry_hbond_refined 0.168 r_nbd_other 0.167 r_symmetry_vdw_refined 0.128 r_chiral_restr 0.123 r_mcbond_other 0.101 r_nbtor_other 0.08 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2048 Nucleic Acid Atoms Solvent Atoms 205 Heterogen Atoms 44
Software Software Software Name Purpose Blu-Ice data collection EPMR phasing REFMAC refinement MOSFLM data reduction SCALA data scaling