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Horse liver alcohol dehydrogenase A317C mutant complexed with NAD+ and 2,3,4,5,6-pentafluorobenzyl alcohol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HLD PDB entry 1hld
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICRODIALYSIS 7 298 50 mM ammonium TES [N-tris(hydroxymethyl)-2-aminoethane sulfonate], 25% MRD, 11 mg/ml protein, 11 mM NAD+, 5 mM 2,3,4,5,6-pentafluorobenzyl alcohol, pH 7.0, MICRODIALYSIS, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.39 48.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.34 α = 91.98 b = 51.31 β = 102.95 c = 92.21 γ = 110.11
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD NOIR-1 SAGGITALLY FOCUSED MIRRORS 2009-03-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 0.80 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 90 92.2 0.061 9.4 3.57 214213 11.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.24 83.6 0.281 3 3.43 19347
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1hld 1.2 19.85 214172 1061 92.29 0.1351 0.135 0.1418 0.1621 0.169 RANDOM 17.5778
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 -0.31 0.41 -0.32 0.12 0.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.981 r_dihedral_angle_4_deg 12.894 r_dihedral_angle_3_deg 11.074 r_dihedral_angle_1_deg 6.182 r_scangle_it 4.959 r_scbond_it 3.343 r_mcangle_it 2.344 r_angle_refined_deg 1.616 r_mcbond_it 1.581 r_rigid_bond_restr 1.331
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.981 r_dihedral_angle_4_deg 12.894 r_dihedral_angle_3_deg 11.074 r_dihedral_angle_1_deg 6.182 r_scangle_it 4.959 r_scbond_it 3.343 r_mcangle_it 2.344 r_angle_refined_deg 1.616 r_mcbond_it 1.581 r_rigid_bond_restr 1.331 r_angle_other_deg 0.989 r_mcbond_other 0.84 r_chiral_restr 0.096 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5572 Nucleic Acid Atoms Solvent Atoms 1098 Heterogen Atoms 142
Software Software Software Name Purpose d*TREK data scaling REFMAC refinement PDB_EXTRACT data extraction d*TREK data reduction