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Structural and functional insights of directly targeting Pin1 by Epigallocatechin-3-gallate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 2.2-2.7M Ammonium Sulfate, 1% PEG400, 1mM Dithiothreitol, 100mM HEPES, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.03 59.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.409 α = 90 b = 69.409 β = 90 c = 79.268 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Mirrors 2007-08-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.99188 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 99.9 0.095 8.9 10.8 17999
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 99 0.498 10.4 1744
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.89 28.1 17967 902 99.76 0.1918 0.1898 0.2316 0.2322 RANDOM 30.8833
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.22 1.11 2.22 -3.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.549 r_dihedral_angle_4_deg 21.693 r_dihedral_angle_3_deg 14.168 r_dihedral_angle_1_deg 6.218 r_scangle_it 2.952 r_scbond_it 1.941 r_mcangle_it 1.334 r_angle_refined_deg 1.317 r_mcbond_it 0.833 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.549 r_dihedral_angle_4_deg 21.693 r_dihedral_angle_3_deg 14.168 r_dihedral_angle_1_deg 6.218 r_scangle_it 2.952 r_scbond_it 1.941 r_mcangle_it 1.334 r_angle_refined_deg 1.317 r_mcbond_it 0.833 r_nbtor_refined 0.307 r_nbd_refined 0.194 r_symmetry_vdw_refined 0.188 r_symmetry_hbond_refined 0.178 r_xyhbond_nbd_refined 0.122 r_chiral_restr 0.092 r_bond_refined_d 0.011 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1165 Nucleic Acid Atoms Solvent Atoms 112 Heterogen Atoms 111
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection MOLREP phasing