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Crystal structure of an exo-alpha-1,6-mannosidase (bacova_03626) from bacteroides ovatus at 1.70 a resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 1.00M LiCl, 20.00% PEG-6000, 0.1M HEPES pH 7.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.18 43.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.613 α = 90 b = 91.138 β = 92.35 c = 99.124 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2010-04-07 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91162,0.97944,0.97886 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 29.044 95.7 0.099 7.42 100307 -3 11.103
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 94.5 0.416 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 29.044 100282 5002 99.59 0.135 0.1333 0.1421 0.1663 0.1724 RANDOM 11.8343
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 -0.04 0.3 -0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.998 r_dihedral_angle_4_deg 16.379 r_dihedral_angle_3_deg 11.983 r_dihedral_angle_1_deg 5.811 r_scangle_it 3.389 r_scbond_it 2.104 r_angle_refined_deg 1.367 r_mcangle_it 1.188 r_angle_other_deg 0.891 r_mcbond_it 0.683
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.998 r_dihedral_angle_4_deg 16.379 r_dihedral_angle_3_deg 11.983 r_dihedral_angle_1_deg 5.811 r_scangle_it 3.389 r_scbond_it 2.104 r_angle_refined_deg 1.367 r_mcangle_it 1.188 r_angle_other_deg 0.891 r_mcbond_it 0.683 r_mcbond_other 0.22 r_chiral_restr 0.09 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7143 Nucleic Acid Atoms Solvent Atoms 1186 Heterogen Atoms 47
Software Software Software Name Purpose SHELX phasing REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing