☰ Navigation Tabs
Structure of a protein with unknown function from Rhodococcus sp. RHA1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.2 291 0.2M Li sulfate, 0.1M Bis-Tris pH6.2, 29% PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.24 45.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.889 α = 90 b = 86.863 β = 95.51 c = 115.255 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r mirror 2010-04-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9793 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.96 50 99 0.098 34.6 4.2 53066 53066
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.96 1.99 94.2 0.35 6.18 3.4 2557
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.96 50 49867 49867 2574 97.89 0.17021 0.17021 0.16759 0.1755 0.22157 0.1839 RANDOM 26.704
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.25 1.05 -0.08 0.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.714 r_dihedral_angle_4_deg 17.865 r_dihedral_angle_3_deg 15.853 r_dihedral_angle_1_deg 4.74 r_scangle_it 4.621 r_scbond_it 2.928 r_mcangle_it 1.801 r_rigid_bond_restr 1.472 r_angle_refined_deg 1.245 r_mcbond_it 1.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.714 r_dihedral_angle_4_deg 17.865 r_dihedral_angle_3_deg 15.853 r_dihedral_angle_1_deg 4.74 r_scangle_it 4.621 r_scbond_it 2.928 r_mcangle_it 1.801 r_rigid_bond_restr 1.472 r_angle_refined_deg 1.245 r_mcbond_it 1.01 r_chiral_restr 0.088 r_bond_refined_d 0.012 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5722 Nucleic Acid Atoms Solvent Atoms 843 Heterogen Atoms 102
Software Software Software Name Purpose SBC-Collect data collection SHELXD phasing MLPHARE phasing ARP model building WARP model building HKL-3000 phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling