☰ Navigation Tabs
Crystal structure of MICA-specific human gamma delta T cell receptor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.6 295 0.4M ammonium sulfate, 1.0M lithium sulfate, 0.1M sodium citrate, 0.03M glycyl-glycyl-glycine, pH 6.6, VAPOR DIFFUSION, HANGING DROP, temperature 295.0K
Crystal Properties Matthews coefficient Solvent content 2.92 57.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.37 α = 90 b = 112.37 β = 90 c = 108.11 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD ADSC QUANTUM 315r Dual crystal, Si(111) 2007-10-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.0000 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.04 50 99.8 0.054 0.054 48.4 4.1 25563 25563
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.04 3.16 99.1 0.365 2.1 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 3.04 32.83 24654 1324 99.84 0.26728 0.26514 0.2726 0.30779 0.317 RANDOM 90.023
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.22 0.22 -0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.928 r_dihedral_angle_4_deg 22.14 r_dihedral_angle_3_deg 21.383 r_dihedral_angle_1_deg 7.161 r_scangle_it 2.765 r_scbond_it 1.838 r_angle_refined_deg 1.418 r_mcangle_it 1.414 r_angle_other_deg 0.814 r_mcbond_it 0.803
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.928 r_dihedral_angle_4_deg 22.14 r_dihedral_angle_3_deg 21.383 r_dihedral_angle_1_deg 7.161 r_scangle_it 2.765 r_scbond_it 1.838 r_angle_refined_deg 1.418 r_mcangle_it 1.414 r_angle_other_deg 0.814 r_mcbond_it 0.803 r_symmetry_vdw_other 0.281 r_symmetry_hbond_refined 0.247 r_nbd_refined 0.24 r_nbd_other 0.236 r_nbtor_refined 0.216 r_xyhbond_nbd_refined 0.2 r_symmetry_vdw_refined 0.19 r_mcbond_other 0.137 r_nbtor_other 0.1 r_chiral_restr 0.078 r_xyhbond_nbd_other 0.032 r_bond_refined_d 0.013 r_bond_other_d 0.004 r_gen_planes_refined 0.004 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4999 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection SHELXS phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling