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Crystal structure of unknown function protein from Leptospirillum rubarum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 297 0.1M Bis-tris, 1.0M tri-Ammonium Citrate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 297K
Crystal Properties Matthews coefficient Solvent content 2.49 50.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.91 α = 90 b = 66.259 β = 90 c = 78.044 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-08-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97924 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 99.7 0.065 39 7.2 56691 54961 -3 19.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.5 1.53 99.5 0.571 2.9 7.2 2671
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.5 50 54899 54899 2793 99.52 0.1528 0.1528 0.151 0.1562 0.1864 0.1889 RANDOM 21.3817
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 1.08 -0.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.792 r_dihedral_angle_3_deg 11.966 r_dihedral_angle_4_deg 11.295 r_dihedral_angle_1_deg 5.632 r_scangle_it 5.622 r_scbond_it 3.826 r_mcangle_it 2.096 r_rigid_bond_restr 1.951 r_angle_refined_deg 1.558 r_mcbond_it 1.377
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.792 r_dihedral_angle_3_deg 11.966 r_dihedral_angle_4_deg 11.295 r_dihedral_angle_1_deg 5.632 r_scangle_it 5.622 r_scbond_it 3.826 r_mcangle_it 2.096 r_rigid_bond_restr 1.951 r_angle_refined_deg 1.558 r_mcbond_it 1.377 r_chiral_restr 0.101 r_bond_refined_d 0.015 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2392 Nucleic Acid Atoms Solvent Atoms 346 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building MLPHARE phasing DM phasing RESOLVE phasing Coot model building ARP/wARP model building