☰ Navigation Tabs
Crystal structure of B. megaterium levansucrase mutant Y247A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.1 298 USING 3 uL OF A 8 MG/ML PROTEIN SOLUTION MIXED WITH 3 uL RESERVOIR BUFFER (0.1 M Na-Phosphate-citrate pH 4.1; 0.2 M lithiumsulfate; 20% (w/v) PEG 1000) IN THE DROPLET.
, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.2 44.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.786 α = 90 b = 100.018 β = 90.59 c = 95.544 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MX-225 (Rayonics LLC) 2009-04-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.91841 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.96 50.01 99.6 118542 118067 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.96 2.11 97.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.96 50.01 118542 118521 6107 93.48 0.2227 0.2227 0.2224 0.2298 0.2328 RANDOM 14.3256
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.21 -10.67 -11.51 8.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.383 r_dihedral_angle_4_deg 12.825 r_dihedral_angle_3_deg 12.744 r_dihedral_angle_1_deg 5.068 r_angle_refined_deg 0.901 r_scangle_it 0.52 r_mcangle_it 0.4 r_scbond_it 0.312 r_mcbond_it 0.234 r_chiral_restr 0.061
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.383 r_dihedral_angle_4_deg 12.825 r_dihedral_angle_3_deg 12.744 r_dihedral_angle_1_deg 5.068 r_angle_refined_deg 0.901 r_scangle_it 0.52 r_mcangle_it 0.4 r_scbond_it 0.312 r_mcbond_it 0.234 r_chiral_restr 0.061 r_bond_refined_d 0.006 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14140 Nucleic Acid Atoms Solvent Atoms 1277 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction DNA data collection XDS data reduction SCALA data scaling MOLREP phasing