☰ Navigation Tabs
Crystal structure of a bacterial phosphoglucomutase, an enzyme important in the virulence of multiple human pathogens
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2FUV PDB Entry 2FUV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 0.1 M Bis Tris, 0.2 M Magnesium Chloride, 25% PEG 3350, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.27 45.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.125 α = 90 b = 85.125 β = 94.42 c = 111.879 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 103 CCD ADSC QUANTUM 315 beamline 2008-11-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.979 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 50 99 0.072 12.3 3.6 78342 26.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.95 2.02 98.5 0.49 2.8 3.6 7760
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB Entry 2FUV 1.95 50 74391 74391 3925 98.77 0.1672 0.1658 0.1949 0.1936 RANDOM 31.328
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.39 -0.5 -1 0.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.65 r_dihedral_angle_4_deg 20.635 r_dihedral_angle_3_deg 13.588 r_dihedral_angle_1_deg 5.663 r_scangle_it 3.227 r_scbond_it 1.933 r_angle_refined_deg 1.197 r_mcangle_it 1.124 r_mcbond_it 0.593 r_chiral_restr 0.082
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.65 r_dihedral_angle_4_deg 20.635 r_dihedral_angle_3_deg 13.588 r_dihedral_angle_1_deg 5.663 r_scangle_it 3.227 r_scbond_it 1.933 r_angle_refined_deg 1.197 r_mcangle_it 1.124 r_mcbond_it 0.593 r_chiral_restr 0.082 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7982 Nucleic Acid Atoms Solvent Atoms 465 Heterogen Atoms 12
Software Software Software Name Purpose ADSC data collection MOLREP phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling