☰ Navigation Tabs
Crystal structure of Corynebacterium glutamicum PimB' in complex with GDP-Man (triclinic crystal form)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5.5 291 6-26% PEG 3350, 0.1 M Bis-Tris pH 5.5, 0.1 M lithium sulfate and 0.1 M glycine, VAPOR DIFFUSION, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.14 42.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.07 α = 92.05 b = 50.02 β = 92.68 c = 85.3 γ = 89.94
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2008-09-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.9762 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 43.8 95.1 0.073 0.073 11.6 2.9 35191 35191 17.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.32 81.2 0.238 0.238 5.9 2.8 4400
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 2.2 43.8 33243 33243 1747 94.81 0.19097 0.19097 0.18937 0.192 0.221 0.2249 RANDOM 13.213
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.36 -0.23 -0.14 -0.94 0.09 0.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.537 r_dihedral_angle_4_deg 16.682 r_dihedral_angle_3_deg 13.186 r_dihedral_angle_1_deg 5.219 r_scangle_it 1.961 r_scbond_it 1.167 r_angle_refined_deg 1.15 r_mcangle_it 0.691 r_mcbond_it 0.408 r_nbtor_refined 0.295
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.537 r_dihedral_angle_4_deg 16.682 r_dihedral_angle_3_deg 13.186 r_dihedral_angle_1_deg 5.219 r_scangle_it 1.961 r_scbond_it 1.167 r_angle_refined_deg 1.15 r_mcangle_it 0.691 r_mcbond_it 0.408 r_nbtor_refined 0.295 r_symmetry_vdw_refined 0.229 r_nbd_refined 0.186 r_xyhbond_nbd_refined 0.117 r_symmetry_hbond_refined 0.081 r_chiral_restr 0.079 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5825 Nucleic Acid Atoms Solvent Atoms 294 Heterogen Atoms 112
Software Software Software Name Purpose ADSC data collection SHARP phasing REFMAC refinement XDS data reduction XSCALE data scaling