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Crystal Structure Xylellain, a cysteine protease from Xylella fastidiosa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 298 20-22% PEG 4000, 60 mM Sodium citrate, 134 mM Ammonium sulfate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.09 41.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.089 α = 75.86 b = 69.314 β = 75.43 c = 82.368 γ = 66.51
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate MIRROR 2005-03-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU ULTRAX 18 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 78.664 91 0.054 0.054 27 8.1 117070 117070 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.74 86.7 0.4 0.4 1.9 4.4 16308
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.65 23.06 116835 116835 5859 90.98 0.1685 0.1685 0.166 0.1641 0.2159 0.2138 RANDOM 22.8106
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.62 1.31 -0.05 -0.82 -0.1 -0.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.169 r_dihedral_angle_4_deg 20.555 r_dihedral_angle_3_deg 14.671 r_dihedral_angle_1_deg 6.246 r_scangle_it 4.483 r_scbond_it 3.095 r_angle_refined_deg 2.089 r_mcangle_it 2.021 r_mcbond_it 1.303 r_chiral_restr 0.146
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.169 r_dihedral_angle_4_deg 20.555 r_dihedral_angle_3_deg 14.671 r_dihedral_angle_1_deg 6.246 r_scangle_it 4.483 r_scbond_it 3.095 r_angle_refined_deg 2.089 r_mcangle_it 2.021 r_mcbond_it 1.303 r_chiral_restr 0.146 r_bond_refined_d 0.026 r_gen_planes_refined 0.013
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8578 Nucleic Acid Atoms Solvent Atoms 1435 Heterogen Atoms 100
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction MAR345dtb data collection