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Crystal Structure of Enoyl-ACP Reductases III (FabL) from B. subtilis (complex with NADP and TCL)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3OIC PDB ENTRY 3OIC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 1.6M sodium citrate , pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.43 49.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.376 α = 90 b = 110.683 β = 91.82 c = 85.169 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2006-02-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 4A 1.0000 PAL/PLS 4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 99.2 0.057 34.7 3.1 100171 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.86 94.9 0.128 8.95 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3OIC 1.8 36.01 94292 4965 99.06 0.15086 0.1493 0.1549 0.18061 0.1862 RANDOM 14.994
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 0.16 -0.2 0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.12 r_dihedral_angle_4_deg 15.394 r_dihedral_angle_3_deg 12.589 r_scangle_it 6.541 r_dihedral_angle_1_deg 5.976 r_scbond_it 3.992 r_mcangle_it 2.319 r_angle_refined_deg 2.138 r_mcbond_it 1.327 r_chiral_restr 0.193
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.12 r_dihedral_angle_4_deg 15.394 r_dihedral_angle_3_deg 12.589 r_scangle_it 6.541 r_dihedral_angle_1_deg 5.976 r_scbond_it 3.992 r_mcangle_it 2.319 r_angle_refined_deg 2.138 r_mcbond_it 1.327 r_chiral_restr 0.193 r_bond_refined_d 0.027 r_gen_planes_refined 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7579 Nucleic Acid Atoms Solvent Atoms 545 Heterogen Atoms 260
Software Software Software Name Purpose ADSC data collection CNS refinement REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling CNS phasing