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Crystal Structure of 6s-98S FIV Protease with Lopinavir bound
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.48 50.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.79 α = 90 b = 81.79 β = 90 c = 33.94 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARmosaic325 Rh coated flat mirror 2010-01-22 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97945 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 70.84 93.5 0.051 0.051 10.9 3.6 21978 21978 24.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 84.9 0.401 0.401 2 3.3 2912
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 70.84 20791 1186 93.45 0.2276 0.2246 0.2183 0.2794 0.2597 RANDOM 28.567
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.14 6.14 -12.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.912 r_dihedral_angle_3_deg 18.676 r_dihedral_angle_4_deg 13.553 r_dihedral_angle_1_deg 7.122 r_scangle_it 2.349 r_scbond_it 1.684 r_angle_refined_deg 1.408 r_mcangle_it 1.042 r_mcbond_it 0.647 r_chiral_restr 0.119
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.912 r_dihedral_angle_3_deg 18.676 r_dihedral_angle_4_deg 13.553 r_dihedral_angle_1_deg 7.122 r_scangle_it 2.349 r_scbond_it 1.684 r_angle_refined_deg 1.408 r_mcangle_it 1.042 r_mcbond_it 0.647 r_chiral_restr 0.119 r_bond_refined_d 0.012 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1778 Nucleic Acid Atoms Solvent Atoms 145 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction SCALA data scaling