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Crystal structure of a FMN/FAD- and NAD(P)H-dependent nitroreductase (nfnB, IL2077) from Idiomarina loihiensis L2TR at 1.90 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 293 1.60M ammonium sulfate, 20.00% Glycerol, 0.1M sodium acetate pH 4.6, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.42 49.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 154.702 α = 90 b = 74.051 β = 112.49 c = 64.565 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2010-06-10 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97920,0.97889 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 29.197 91.7 0.04 11.76 52053 -3 24.96
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 87.9 0.354 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 29.197 52053 2638 98.09 0.1592 0.1574 0.1675 0.1937 0.1991 RANDOM 36.2008
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.55 -0.03 -0.1 0.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.423 r_dihedral_angle_4_deg 18.732 r_dihedral_angle_3_deg 13.192 r_dihedral_angle_1_deg 4.951 r_scangle_it 3.599 r_scbond_it 2.409 r_angle_refined_deg 1.525 r_mcangle_it 1.328 r_angle_other_deg 0.899 r_mcbond_it 0.764
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.423 r_dihedral_angle_4_deg 18.732 r_dihedral_angle_3_deg 13.192 r_dihedral_angle_1_deg 4.951 r_scangle_it 3.599 r_scbond_it 2.409 r_angle_refined_deg 1.525 r_mcangle_it 1.328 r_angle_other_deg 0.899 r_mcbond_it 0.764 r_mcbond_other 0.232 r_chiral_restr 0.084 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4907 Nucleic Acid Atoms Solvent Atoms 384 Heterogen Atoms 315
Software Software Software Name Purpose SHELX phasing REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing