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Crystal structure of cAMP bound cGMP-dependent protein kinase(92-227)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RGS PDB ENTRY 1RGS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 277.15 1.4 M sodium/potassium phosphate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 277.15K
Crystal Properties Matthews coefficient Solvent content 4.48 72.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.139 α = 90 b = 107.139 β = 90 c = 168.967 γ = 120
Symmetry Space Group P 62 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2009-12-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 1.0000 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.49 50 98.7 0.105 0.101 13.8 20607 20339 1 1
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1RGS 2.49 46.393 2 20607 19711 1011 94.97 0.2071 0.2071 0.2058 0.2044 0.2302 0.2283 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -14.7888 -14.7888 4.4368
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 17.714 f_angle_d 1.274 f_chiral_restr 0.074 f_bond_d 0.014 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2005 Nucleic Acid Atoms Solvent Atoms 99 Heterogen Atoms 44
Software Software Software Name Purpose HKL-2000 data collection BALBES phasing PHENIX refinement HKL-2000 data reduction HKL-2000 data scaling