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Chemically Self-assembled Antibody Nanorings (CSANs): Design and Characterization of an Anti-CD3 IgM Biomimetic
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RH3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.6 273 14-24% PEG 6K, 200 mM MnCl2, 18-24 mM KPO4, pH 6.6, VAPOR DIFFUSION, HANGING DROP, temperature 273K
Crystal Properties Matthews coefficient Solvent content 2.46 50.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.714 α = 90 b = 91.714 β = 90 c = 73.13 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD ADSC QUANTUM 210 Si crystal 2004-02-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE A1 0.978 CHESS A1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 25 98.7 0.094 0.083 10 7.7 55833 32398 2 2 27.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.79 1.89 98.3 0.18 0.16 1.8 6.7 1900
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1rh3 1.79 23.2 2 2 30751 30751 1644 98.82 0.2032 0.20517 0.20316 0.2017 0.24174 0.2408 RANDOM 19.013
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.628 r_dihedral_angle_4_deg 20.667 r_dihedral_angle_3_deg 15.527 r_dihedral_angle_1_deg 8.366 r_scangle_it 5.468 r_scbond_it 3.595 r_mcangle_it 2.32 r_angle_refined_deg 2.218 r_mcbond_it 1.363 r_chiral_restr 0.224
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.628 r_dihedral_angle_4_deg 20.667 r_dihedral_angle_3_deg 15.527 r_dihedral_angle_1_deg 8.366 r_scangle_it 5.468 r_scbond_it 3.595 r_mcangle_it 2.32 r_angle_refined_deg 2.218 r_mcbond_it 1.363 r_chiral_restr 0.224 r_bond_refined_d 0.024 r_gen_planes_refined 0.013
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2535 Nucleic Acid Atoms Solvent Atoms 129 Heterogen Atoms 80
Software Software Software Name Purpose HKL-2000 data collection X-PLOR model building REFMAC refinement HKL-2000 data reduction SCALA data scaling X-PLOR phasing