☰ Navigation Tabs
Human MSL3 Chromodomain bound to DNA and H4K20me1 peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 277 0.04M Barium acetate, 0.05M sodium cacodylate, 18% 2-methyl-2,4-pentanediol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.3 46.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.976 α = 81.35 b = 44.094 β = 89.84 c = 67.5 γ = 90.04
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.99999 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 40 97.2 0.049 2 17458 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.35 2.44 97.6 0.42 2 1742
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.35 9.93 16389 880 97.19 0.229 0.2265 0.2298 0.2773 0.2774 RANDOM 77.65
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.31 -0.21 -0.18 0.2 0.02 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.585 r_dihedral_angle_4_deg 22.872 r_dihedral_angle_3_deg 22.198 r_dihedral_angle_1_deg 7.53 r_mcangle_it 2.557 r_scangle_it 2.073 r_angle_refined_deg 1.94 r_angle_other_deg 1.641 r_mcbond_it 1.473 r_scbond_it 1.273
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.585 r_dihedral_angle_4_deg 22.872 r_dihedral_angle_3_deg 22.198 r_dihedral_angle_1_deg 7.53 r_mcangle_it 2.557 r_scangle_it 2.073 r_angle_refined_deg 1.94 r_angle_other_deg 1.641 r_mcbond_it 1.473 r_scbond_it 1.273 r_mcbond_other 0.245 r_chiral_restr 0.104 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.004 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1435 Nucleic Acid Atoms 1300 Solvent Atoms 108 Heterogen Atoms 5
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction