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EthR from Mycobacterium tuberculosis in complex with compound BDM14801
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 0.1mM Mes pH6.5, 1.5M Ammonium Sulfate and 10% Glycerol , VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.47 50.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 123.01 α = 90 b = 123.01 β = 90 c = 33.91 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR591 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 32.69 99.4 21076 20950 89526
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 32.69 21076 19898 1047 99.4 0.18408 0.18213 0.181 0.2211 0.2185 RANDOM 22.163
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.18 -0.18 0.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.704 r_dihedral_angle_4_deg 16.84 r_dihedral_angle_3_deg 15.643 r_dihedral_angle_1_deg 5.258 r_sphericity_free 5.243 r_scangle_it 3.885 r_sphericity_bonded 3.111 r_scbond_it 2.63 r_mcangle_it 1.865 r_rigid_bond_restr 1.841
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.704 r_dihedral_angle_4_deg 16.84 r_dihedral_angle_3_deg 15.643 r_dihedral_angle_1_deg 5.258 r_sphericity_free 5.243 r_scangle_it 3.885 r_sphericity_bonded 3.111 r_scbond_it 2.63 r_mcangle_it 1.865 r_rigid_bond_restr 1.841 r_angle_refined_deg 1.512 r_mcbond_it 1.258 r_xyhbond_nbd_refined 0.306 r_nbtor_refined 0.285 r_nbd_refined 0.224 r_symmetry_hbond_refined 0.223 r_symmetry_vdw_refined 0.159 r_chiral_restr 0.106 r_bond_refined_d 0.019 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1510 Nucleic Acid Atoms Solvent Atoms 234 Heterogen Atoms 22
Software Software Software Name Purpose MAR345dtb data collection CCP4 model building REFMAC refinement XDS data reduction XDS data scaling CCP4 phasing