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Crystal Structure of Wild-type Rabbit PrP 126-230
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UW3 PDB ENTRY 1UW3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 6.5 298 Sodium Cacodylate, NaCl, glycerol, pH 6.5, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.22 44.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 29.53 α = 90 b = 86.17 β = 90 c = 87.14 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Marmosaic CCD300 2008-07-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.9793 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 19.44 99.7 30241 30195 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1UW3 1.6 19.44 30259 30148 1529 99.63 0.1605 0.1605 0.1573 0.2176 0.2377 RANDOM 19.6035
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.84 0.39 0.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.526 r_dihedral_angle_3_deg 13.579 r_dihedral_angle_4_deg 10.396 r_scangle_it 7.17 r_dihedral_angle_1_deg 5.848 r_scbond_it 5.07 r_mcangle_it 3.084 r_rigid_bond_restr 2.065 r_mcbond_it 2.039 r_angle_refined_deg 1.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.526 r_dihedral_angle_3_deg 13.579 r_dihedral_angle_4_deg 10.396 r_scangle_it 7.17 r_dihedral_angle_1_deg 5.848 r_scbond_it 5.07 r_mcangle_it 3.084 r_rigid_bond_restr 2.065 r_mcbond_it 2.039 r_angle_refined_deg 1.79 r_angle_other_deg 1.049 r_mcbond_other 0.717 r_chiral_restr 0.117 r_bond_refined_d 0.022 r_gen_planes_refined 0.011 r_gen_planes_other 0.004 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1682 Nucleic Acid Atoms Solvent Atoms 192 Heterogen Atoms 24
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction Macromolecular data collection XDS data reduction PHASER phasing