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Fk1 domain of FKBP51, crystal form VI
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3O5P PDB entry 3O5P
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 293 1.8 M (NH4)3citrate, pH 7.0, vapor diffusion, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.45 49.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.381 α = 90 b = 54.381 β = 90 c = 90.155 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2006-12-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.972 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 47.096 99.9 0.086 0.086 10.8 4.4 20975 20975 20.19
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 100 0.409 0.409 1.8 4.4 2993
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3O5P 1.6 20 20926 1076 99.9 0.1893 0.1873 0.1862 0.2291 0.2261 RANDOM 21.2515
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.15 0.07 0.15 -0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.625 r_dihedral_angle_3_deg 13.852 r_dihedral_angle_4_deg 12.016 r_dihedral_angle_1_deg 7.161 r_sphericity_free 4.559 r_scangle_it 3.799 r_sphericity_bonded 3.354 r_scbond_it 3.012 r_rigid_bond_restr 2.485 r_mcangle_it 1.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.625 r_dihedral_angle_3_deg 13.852 r_dihedral_angle_4_deg 12.016 r_dihedral_angle_1_deg 7.161 r_sphericity_free 4.559 r_scangle_it 3.799 r_sphericity_bonded 3.354 r_scbond_it 3.012 r_rigid_bond_restr 2.485 r_mcangle_it 1.73 r_angle_refined_deg 1.387 r_mcbond_it 1.21 r_nbtor_refined 0.303 r_symmetry_vdw_refined 0.292 r_symmetry_hbond_refined 0.252 r_nbd_refined 0.227 r_xyhbond_nbd_refined 0.138 r_chiral_restr 0.123 r_bond_refined_d 0.012 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 973 Nucleic Acid Atoms Solvent Atoms 108 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction