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Structure-function analysis of human L-Prostaglandin D Synthase bound with fatty acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 3.8 298 0.1M citric acid, pH 3.8, 1.7M ammonium sulfate , VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2 38.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.221 α = 90 b = 90.221 β = 90 c = 35.635 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD ADSC QUANTUM 315 2009-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 92.8 29672 28122 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.73 63
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 50 28122 1502 92.56 0.20012 0.19667 0.2093 0.26442 0.2716 RANDOM 27.554
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.68 -1.68 3.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.148 r_dihedral_angle_3_deg 17.779 r_dihedral_angle_4_deg 17.355 r_dihedral_angle_1_deg 6.84 r_scangle_it 5.58 r_scbond_it 3.71 r_mcangle_it 2.4 r_angle_refined_deg 2.043 r_mcbond_it 1.383 r_chiral_restr 0.144
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.148 r_dihedral_angle_3_deg 17.779 r_dihedral_angle_4_deg 17.355 r_dihedral_angle_1_deg 6.84 r_scangle_it 5.58 r_scbond_it 3.71 r_mcangle_it 2.4 r_angle_refined_deg 2.043 r_mcbond_it 1.383 r_chiral_restr 0.144 r_bond_refined_d 0.022 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2503 Nucleic Acid Atoms Solvent Atoms 155 Heterogen Atoms 81
Software Software Software Name Purpose HKL-2000 data collection PHASES phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling