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Anti-beta-amyloid antibody c706 fab in space group c2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3MCL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 3.5 293 0.1 M CITRATE PH 3.5, 18% PEG 8000 CRYO CONDITIONS, 0.1 M CITRATE PH 3.5, 25% PEG 8000, 20% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.56 52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 136.04 α = 90 b = 45.02 β = 92.69 c = 158.2 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD RIGAKU SATURN 944 VARIMAX HF 2008-02-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 53 85.4 0.078 12.3 6 20634 -3 96
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 82.3 0.482 2.4 6.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3MCL 2.8 15 20043 20043 432 83.3 0.223 0.22 0.2218 0.304 0.3313 RANDOM 70.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.54 -0.49 3.55 -1.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.631 r_scangle_it 24.593 r_dihedral_angle_3_deg 20.009 r_scbond_it 17.315 r_dihedral_angle_4_deg 16.869 r_dihedral_angle_1_deg 6.923 r_mcangle_it 6.327 r_mcbond_it 2.853 r_angle_refined_deg 1.347 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.631 r_scangle_it 24.593 r_dihedral_angle_3_deg 20.009 r_scbond_it 17.315 r_dihedral_angle_4_deg 16.869 r_dihedral_angle_1_deg 6.923 r_mcangle_it 6.327 r_mcbond_it 2.853 r_angle_refined_deg 1.347 r_nbtor_refined 0.302 r_symmetry_vdw_refined 0.251 r_nbd_refined 0.22 r_symmetry_hbond_refined 0.176 r_xyhbond_nbd_refined 0.145 r_chiral_restr 0.083 r_bond_refined_d 0.009 r_gen_planes_refined 0.001 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6540 Nucleic Acid Atoms Solvent Atoms 96 Heterogen Atoms
Software Software Software Name Purpose CrystalClear data collection AMoRE phasing REFMAC refinement d*TREK data reduction d*TREK data scaling