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The crystal structure of the putative lipoprotein from Colwellia psychrerythraea
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 289 0.2M Lithium sulfate monohydrate, 0.1M Bis-tris pH5.5, 25% PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.63 53.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.954 α = 114.32 b = 94.471 β = 91.11 c = 93.894 γ = 100.43
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r mirrors 2009-04-21 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794, 0.9796 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 85.13 95.34 0.086 9.85 1.4 216434 206348 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.703 1.747 72.08 0.623 1 1.2 16813
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 85.13 1 1 216434 206348 10876 95.34 0.14796 0.14599 0.15 0.18545 0.1884 RANDOM 11.486
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.22 0.08 0.05 1.36 0.48 -0.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.563 r_dihedral_angle_4_deg 17.296 r_dihedral_angle_3_deg 14.446 r_scangle_it 5.791 r_dihedral_angle_1_deg 5.553 r_scbond_it 3.759 r_mcangle_it 2.248 r_angle_refined_deg 1.833 r_mcbond_it 1.333 r_angle_other_deg 1.037
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.563 r_dihedral_angle_4_deg 17.296 r_dihedral_angle_3_deg 14.446 r_scangle_it 5.791 r_dihedral_angle_1_deg 5.553 r_scbond_it 3.759 r_mcangle_it 2.248 r_angle_refined_deg 1.833 r_mcbond_it 1.333 r_angle_other_deg 1.037 r_mcbond_other 0.472 r_chiral_restr 0.134 r_bond_refined_d 0.023 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13838 Nucleic Acid Atoms Solvent Atoms 2398 Heterogen Atoms 102
Software Software Software Name Purpose SBC-Collect data collection HKL-3000 phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling