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Crystal Structure of the Salmonella Type III Secretion System Tip Protein SipD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 298 25% PEG 3350, 100mM Tris, 200mM (NH4)2SO4, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.28 46.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 203.064 α = 90 b = 52.121 β = 90.05 c = 57.519 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2009-06-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-BM 1.0 APS 17-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 25.35 82.2 0.044 39.2 3.7 69282 65771 27.251
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.65 25.35 69282 65771 3474 0.21226 0.21054 0.2063 0.24453 0.238 RANDOM 27.251
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.898 r_dihedral_angle_3_deg 14.533 r_dihedral_angle_4_deg 7.533 r_dihedral_angle_1_deg 4.666 r_scangle_it 3.803 r_scbond_it 2.472 r_mcangle_it 1.521 r_angle_refined_deg 1.283 r_mcbond_it 0.945 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.898 r_dihedral_angle_3_deg 14.533 r_dihedral_angle_4_deg 7.533 r_dihedral_angle_1_deg 4.666 r_scangle_it 3.803 r_scbond_it 2.472 r_mcangle_it 1.521 r_angle_refined_deg 1.283 r_mcbond_it 0.945 r_nbtor_refined 0.299 r_symmetry_vdw_refined 0.226 r_nbd_refined 0.202 r_xyhbond_nbd_refined 0.139 r_symmetry_hbond_refined 0.11 r_chiral_restr 0.086 r_bond_refined_d 0.012 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4310 Nucleic Acid Atoms Solvent Atoms 482 Heterogen Atoms 1
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling