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Non-phosphorylated TYK2 kinase with CMP6
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2B7A PDB entry 2B7A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 KSCN, PEG3350, hexafluoro-2-propanol, pH 0.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.18 43.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.59 α = 90 b = 64.91 β = 90 c = 83.02 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 IMAGE PLATE RIGAKU RAXIS IV++ 2007-09-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 98.4 0.085 11 5.4 24750 24354 -2 22
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2B7A 2 28.3 20110 20105 1096 99.63 0.212 0.21102 0.20879 0.25347 0.2483 RANDOM 21.401
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.1 -0.06 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.703 r_dihedral_angle_4_deg 20.71 r_dihedral_angle_3_deg 13.678 r_dihedral_angle_1_deg 5.625 r_scangle_it 3.279 r_mcangle_it 3.183 r_mcbond_it 2.866 r_scbond_it 2.376 r_angle_refined_deg 1.285 r_angle_other_deg 0.879
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.703 r_dihedral_angle_4_deg 20.71 r_dihedral_angle_3_deg 13.678 r_dihedral_angle_1_deg 5.625 r_scangle_it 3.279 r_mcangle_it 3.183 r_mcbond_it 2.866 r_scbond_it 2.376 r_angle_refined_deg 1.285 r_angle_other_deg 0.879 r_mcbond_other 0.341 r_symmetry_vdw_other 0.241 r_symmetry_hbond_refined 0.209 r_nbd_refined 0.195 r_symmetry_vdw_refined 0.193 r_nbd_other 0.186 r_nbtor_refined 0.176 r_xyhbond_nbd_refined 0.131 r_nbtor_other 0.079 r_chiral_restr 0.071 r_bond_refined_d 0.007 r_bond_other_d 0.007 r_gen_planes_refined 0.003 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2331 Nucleic Acid Atoms Solvent Atoms 173 Heterogen Atoms 23
Software Software Software Name Purpose CrystalClear data collection MOLREP phasing REFMAC refinement CrystalClear data reduction CrystalClear data scaling