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Non-phosphorylated TYK2 JH1 domain with Quinoline-Thiadiazole-Thiophene Inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3NZ0 PDB entry 3NZ0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 PEG3350, sodium acetate, pH 0.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.41 48.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.318 α = 90 b = 70.436 β = 90 c = 86.488 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 210 2008-06-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 0.9774 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 99.5 0.137 10 4.4 12296 12234 -2 42
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3NZ0 2.5 40 12234 11450 684 99.53 0.22 0.21902 0.21546 0.2199 0.27481 0.2651 RANDOM 29.222
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.36 -2.03 0.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.39 r_dihedral_angle_4_deg 22.619 r_dihedral_angle_3_deg 20.028 r_dihedral_angle_1_deg 6.002 r_mcangle_it 5.295 r_scangle_it 5.13 r_scbond_it 3.527 r_mcbond_it 3.439 r_angle_refined_deg 1.555 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.39 r_dihedral_angle_4_deg 22.619 r_dihedral_angle_3_deg 20.028 r_dihedral_angle_1_deg 6.002 r_mcangle_it 5.295 r_scangle_it 5.13 r_scbond_it 3.527 r_mcbond_it 3.439 r_angle_refined_deg 1.555 r_nbtor_refined 0.309 r_nbd_refined 0.21 r_symmetry_vdw_refined 0.188 r_xyhbond_nbd_refined 0.133 r_symmetry_hbond_refined 0.102 r_chiral_restr 0.092 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2352 Nucleic Acid Atoms Solvent Atoms 56 Heterogen Atoms 41
Software Software Software Name Purpose BOS data collection PHASER phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling