☰ Navigation Tabs
Malonyl-CoA Ligase Ternary Product Complex with Methylmalonyl-CoA and AMP bound
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9.5 298 33% PEG 4000, 0.1M magnesium chloride, pH 9.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.31 46.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.376 α = 90 b = 86.786 β = 90 c = 153.391 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2010-01-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.0000 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.43 76.7 100 0.062 15.5 6.8 91903
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.43 1.45 100 0.292 3.9 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.43 76.7 88129 83693 4436 98.46 0.1962 0.19511 0.1975 0.21612 0.218 RANDOM 18.371
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.39 0.05 -0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.626 r_dihedral_angle_4_deg 20.218 r_dihedral_angle_3_deg 13.49 r_dihedral_angle_1_deg 6.863 r_scangle_it 5.327 r_scbond_it 3.759 r_mcangle_it 2.55 r_angle_refined_deg 1.77 r_mcbond_it 1.589 r_chiral_restr 0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.626 r_dihedral_angle_4_deg 20.218 r_dihedral_angle_3_deg 13.49 r_dihedral_angle_1_deg 6.863 r_scangle_it 5.327 r_scbond_it 3.759 r_mcangle_it 2.55 r_angle_refined_deg 1.77 r_mcbond_it 1.589 r_chiral_restr 0.2 r_gen_planes_refined 0.018 r_bond_refined_d 0.013 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3378 Nucleic Acid Atoms Solvent Atoms 404 Heterogen Atoms 55
Software Software Software Name Purpose ADSC data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling