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Crystal Structure of G Protein-Coupled Receptor Kinase 6 in Complex with Sangivamycin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.2 277 10 mg/ml GRK6 mixed 1:1 with well containing 1.9 M AMS and 100 mM Bis-Tris, pH 5.2, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 5.62 78.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 154.59 α = 90 b = 154.59 β = 90 c = 207.914 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD MARMOSAIC 300 mm CCD 2008-08-11 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97856 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 40 59.4 0.088 8.1 3.9 77021 45850 -2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.7 2.75 1.2 0.351 4.8
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 2.72 30 43466 45750 2284 60.43 0.22709 0.22709 0.2263 0.2384 0.224 RANDOM 99.517
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.75 2.38 4.75 -7.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.219 r_dihedral_angle_4_deg 15.431 r_dihedral_angle_3_deg 15.162 r_dihedral_angle_1_deg 5.13 r_mcangle_it 1.639 r_scangle_it 1.365 r_angle_refined_deg 1.064 r_mcbond_it 0.9 r_scbond_it 0.765 r_angle_other_deg 0.754
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.219 r_dihedral_angle_4_deg 15.431 r_dihedral_angle_3_deg 15.162 r_dihedral_angle_1_deg 5.13 r_mcangle_it 1.639 r_scangle_it 1.365 r_angle_refined_deg 1.064 r_mcbond_it 0.9 r_scbond_it 0.765 r_angle_other_deg 0.754 r_mcbond_other 0.068 r_chiral_restr 0.054 r_bond_refined_d 0.008 r_bond_other_d 0.001 r_gen_planes_refined 0.001 r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8908 Nucleic Acid Atoms Solvent Atoms 12 Heterogen Atoms 126
Software Software Software Name Purpose SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction