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The structure of cobalt-substituted pseudoazurin from Alcaligenes faecalis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.7 Protein at 5 mg/ml concentration. 50mM Na-citrate pH 5.7, 20 mM CoCl2, 2.8 M ammonium sulfate, VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 2.67 53.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.033 α = 90 b = 50.033 β = 90 c = 98.803 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 291 IMAGE PLATE MAR scanner 300 mm plate Max-Flux mirrors (Osmic Inc.) 2010-05-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.86 43.33 99.2 0.038 14.5 10.3 11749
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.86 1.93 98.6 98.6 0.073 8.8 5.8 1214
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.86 43.33 11154 556 99.42 0.1509 0.14956 0.1597 0.17806 0.1821 RANDOM 21.21
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 0.01 0.03 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.689 r_dihedral_angle_3_deg 17.656 r_dihedral_angle_4_deg 10.415 r_dihedral_angle_1_deg 6.103 r_scangle_it 3.83 r_scbond_it 2.861 r_mcangle_it 1.569 r_angle_other_deg 1.559 r_angle_refined_deg 1.449 r_mcbond_it 1.398
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.689 r_dihedral_angle_3_deg 17.656 r_dihedral_angle_4_deg 10.415 r_dihedral_angle_1_deg 6.103 r_scangle_it 3.83 r_scbond_it 2.861 r_mcangle_it 1.569 r_angle_other_deg 1.559 r_angle_refined_deg 1.449 r_mcbond_it 1.398 r_symmetry_hbond_refined 0.421 r_mcbond_other 0.235 r_nbd_refined 0.197 r_nbd_other 0.183 r_xyhbond_nbd_refined 0.18 r_symmetry_vdw_refined 0.173 r_nbtor_refined 0.17 r_symmetry_vdw_other 0.149 r_nbtor_other 0.089 r_chiral_restr 0.085 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 916 Nucleic Acid Atoms Solvent Atoms 109 Heterogen Atoms 1
Software Software Software Name Purpose Patterson model building REFMAC refinement DENZO data reduction SCALEPACK data scaling Patterson phasing