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MMHFGN segment 138-143 from Syrian Hamster prion
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 1.2 M Ammonium sulfate, 200 mM BisTris pH 7.5, vapor diffusion, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.39 11.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 9.513 α = 90 b = 11.784 β = 93.04 c = 36.541 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2008-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-D 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 80 97.2 0.162 15.9 10.5 939
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.76 88 0.15 5.8 73
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 36.49 935 139 97.09 0.206 0.1958 0.2018 0.2688 0.2723 RANDOM 20.7686
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.25 -0.12 -0.11 -0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.636 r_dihedral_angle_3_deg 13.371 r_dihedral_angle_1_deg 5.404 r_scangle_it 4.721 r_scbond_it 3.55 r_mcangle_it 2.024 r_angle_refined_deg 1.904 r_mcbond_it 1.1 r_angle_other_deg 0.948 r_mcbond_other 0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.636 r_dihedral_angle_3_deg 13.371 r_dihedral_angle_1_deg 5.404 r_scangle_it 4.721 r_scbond_it 3.55 r_mcangle_it 2.024 r_angle_refined_deg 1.904 r_mcbond_it 1.1 r_angle_other_deg 0.948 r_mcbond_other 0.29 r_chiral_restr 0.085 r_bond_refined_d 0.024 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 100 Nucleic Acid Atoms Solvent Atoms 3 Heterogen Atoms
Software Software Software Name Purpose SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction