☰ Navigation Tabs
Apo form of the multicopper oxidase CueO
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1KV7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 293 16% polyethylene glycol 4000, 0.2 M ammonium acetate, 0.1 M sodium acetate, pH 4.6; , VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.15 42.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.2 α = 90 b = 90.81 β = 103.31 c = 53.774 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ Osmic confocal blue 2002-12-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 26.3 96 0.097 12.6 3.9 30343 30343 36
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 93 0.35 2.9 3.9 2974
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1KV7 2 26.3 28793 1549 95.61 0.19599 0.19307 0.2048 0.25051 0.2553 RANDOM 30.869
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.69 0.35 -0.1 0.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.551 r_dihedral_angle_4_deg 18.08 r_dihedral_angle_3_deg 13.515 r_dihedral_angle_1_deg 6.828 r_scangle_it 2.958 r_scbond_it 1.844 r_angle_refined_deg 1.377 r_mcangle_it 1.062 r_angle_other_deg 0.876 r_mcbond_it 0.591
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.551 r_dihedral_angle_4_deg 18.08 r_dihedral_angle_3_deg 13.515 r_dihedral_angle_1_deg 6.828 r_scangle_it 2.958 r_scbond_it 1.844 r_angle_refined_deg 1.377 r_mcangle_it 1.062 r_angle_other_deg 0.876 r_mcbond_it 0.591 r_mcbond_other 0.139 r_chiral_restr 0.079 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3684 Nucleic Acid Atoms Solvent Atoms 391 Heterogen Atoms
Software Software Software Name Purpose CrystalClear data collection REFMAC refinement CrystalClear data reduction CrystalClear data scaling