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Structure of a C-terminal fragment of its Vps53 subunit suggests similarity of GARP to a family of tethering complexes
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 295 50 mM Tris at pH 8.5, 10% PEG 4K, 200 mM BaCl2, and 10 mM DTT, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.99 58.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 127.236 α = 90 b = 127.236 β = 90 c = 81.658 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 CCD ADSC QUANTUM 315 2009-10-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.97915 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 25 100 8608 8606
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.9 3 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.9 24.4 8608 8606 428 99.98 0.19114 0.18963 0.202 0.22072 0.2269 RANDOM 61.519
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.69 -0.34 -0.69 1.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.343 r_scangle_it 12.297 r_dihedral_angle_3_deg 11.828 r_dihedral_angle_4_deg 10.535 r_scbond_it 7.733 r_mcangle_it 4.52 r_dihedral_angle_1_deg 3.206 r_mcbond_it 1.86 r_angle_refined_deg 1.768 r_chiral_restr 0.115
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.343 r_scangle_it 12.297 r_dihedral_angle_3_deg 11.828 r_dihedral_angle_4_deg 10.535 r_scbond_it 7.733 r_mcangle_it 4.52 r_dihedral_angle_1_deg 3.206 r_mcbond_it 1.86 r_angle_refined_deg 1.768 r_chiral_restr 0.115 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1711 Nucleic Acid Atoms Solvent Atoms 19 Heterogen Atoms 3
Software Software Software Name Purpose HKL-2000 data collection SHARP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling