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Crystal Structure of Bovine Xanthine Oxidase in Complex with 6-Mercaptopurine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 sitting batch 7 298 PEG 8000, pH 7.0, sitting batch, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.57 52.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 134.636 α = 90 b = 73.928 β = 97.01 c = 140.353 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MAR CCD 165 mm 2008-10-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.9793 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 45.5 92.4 7.5 84753 78350 2 27.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.6 2.668 92.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 45.5 78350 3922 92.42 0.2195 0.2169 0.2172 0.2691 0.2684 RANDOM 27.0715
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.72 -0.19 0.25 1.42
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.493 r_dihedral_angle_4_deg 21.578 r_dihedral_angle_3_deg 17.837 r_dihedral_angle_1_deg 6.708 r_scangle_it 2.936 r_scbond_it 1.827 r_angle_refined_deg 1.682 r_mcangle_it 1.174 r_mcbond_it 0.711 r_symmetry_vdw_refined 0.385
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.493 r_dihedral_angle_4_deg 21.578 r_dihedral_angle_3_deg 17.837 r_dihedral_angle_1_deg 6.708 r_scangle_it 2.936 r_scbond_it 1.827 r_angle_refined_deg 1.682 r_mcangle_it 1.174 r_mcbond_it 0.711 r_symmetry_vdw_refined 0.385 r_nbtor_refined 0.306 r_nbd_refined 0.22 r_xyhbond_nbd_refined 0.156 r_symmetry_hbond_refined 0.146 r_chiral_restr 0.112 r_bond_refined_d 0.016 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 18872 Nucleic Acid Atoms Solvent Atoms 287 Heterogen Atoms 198
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction SCALA data scaling MOLREP phasing