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A putative CBS domain-containing protein from Salmonella typhimurium LT2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 294 0.1 M MES, 25% w/v PEG4000, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.19 43.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.123 α = 90 b = 54.122 β = 94.78 c = 92.119 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD MIRROR 2010-05-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97872 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99.4 0.12 18.72 3.7 34373 34373 -3 32.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.03 97.7 0.48 2.08 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 50 32639 32639 1735 98.91 0.19351 0.19009 0.1952 0.25833 0.2581 RANDOM 22.581
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.46 0.06 0.45 -0.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.856 r_dihedral_angle_3_deg 11.618 r_dihedral_angle_4_deg 11.572 r_scangle_it 7.648 r_scbond_it 4.946 r_dihedral_angle_1_deg 3.117 r_mcangle_it 3.02 r_angle_refined_deg 1.967 r_mcbond_it 1.67 r_angle_other_deg 1.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.856 r_dihedral_angle_3_deg 11.618 r_dihedral_angle_4_deg 11.572 r_scangle_it 7.648 r_scbond_it 4.946 r_dihedral_angle_1_deg 3.117 r_mcangle_it 3.02 r_angle_refined_deg 1.967 r_mcbond_it 1.67 r_angle_other_deg 1.001 r_mcbond_other 0.515 r_chiral_restr 0.119 r_bond_refined_d 0.019 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3945 Nucleic Acid Atoms Solvent Atoms 208 Heterogen Atoms 92
Software Software Software Name Purpose Blu-Ice data collection HKL-3000 phasing MLPHARE phasing DM model building SHELXD phasing RESOLVE model building ARP model building Coot model building CCP4 model building REFMAC refinement HKL-2000 data reduction HKL-3000 data scaling DM phasing RESOLVE phasing CCP4 phasing