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Crystal structure of JNK2 complexed with BIRB796
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3E7O
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 0.1M HEPES, 0.1M sodium chloride, 1.6M ammonium sulfate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.35 47.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.17 α = 90 b = 92.339 β = 90 c = 112.109 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 1.0 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 50 99.9 0.084 11.1 33595 34.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.35 2.43 100 0.569 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 3E7O 2.35 50 31845 1698 99.88 0.21438 0.21231 0.2089 0.25431 0.2485 RANDOM 26.521
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.46 1.57 -1.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.735 r_dihedral_angle_4_deg 20.146 r_dihedral_angle_3_deg 16.402 r_dihedral_angle_1_deg 5.676 r_scangle_it 2.133 r_scbond_it 1.327 r_angle_refined_deg 1.157 r_mcangle_it 1.04 r_mcbond_it 0.612 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.735 r_dihedral_angle_4_deg 20.146 r_dihedral_angle_3_deg 16.402 r_dihedral_angle_1_deg 5.676 r_scangle_it 2.133 r_scbond_it 1.327 r_angle_refined_deg 1.157 r_mcangle_it 1.04 r_mcbond_it 0.612 r_nbtor_refined 0.303 r_symmetry_hbond_refined 0.202 r_nbd_refined 0.195 r_symmetry_vdw_refined 0.174 r_xyhbond_nbd_refined 0.149 r_chiral_restr 0.081 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5762 Nucleic Acid Atoms Solvent Atoms 290 Heterogen Atoms 78
Software Software Software Name Purpose ADSC data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling