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Crystal structure of IspG (gcpE)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 293 100mM Bis-Tris, 9% PEG 8000, 17mM SrCl2, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.86 56.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 243.7 α = 90 b = 119.01 β = 95.48 c = 63.82 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2009-12-10 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.7362, 1.7421, 1.7122 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 30 99.4 0.054 0.068 19 4.2 55518 3 3 35.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.8 99.9 0.419 0.525 3.5 4.2 10138
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.7 15 3 47122 47078 2478 100 0.22375 0.22375 0.22147 0.2274 0.26614 0.2683 RANDOM 35.809
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.61 -1.28 2.29 0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.55 r_dihedral_angle_3_deg 17.387 r_dihedral_angle_4_deg 14.43 r_dihedral_angle_1_deg 4.99 r_scangle_it 1.145 r_angle_refined_deg 1.002 r_sphericity_free 0.858 r_mcangle_it 0.844 r_scbond_it 0.638 r_rigid_bond_restr 0.518
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.55 r_dihedral_angle_3_deg 17.387 r_dihedral_angle_4_deg 14.43 r_dihedral_angle_1_deg 4.99 r_scangle_it 1.145 r_angle_refined_deg 1.002 r_sphericity_free 0.858 r_mcangle_it 0.844 r_scbond_it 0.638 r_rigid_bond_restr 0.518 r_mcbond_it 0.468 r_sphericity_bonded 0.273 r_chiral_restr 0.069 r_bond_refined_d 0.006 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10787 Nucleic Acid Atoms Solvent Atoms 247 Heterogen Atoms 32
Software Software Software Name Purpose XDS data scaling SHARP phasing REFMAC refinement XDS data reduction XSCALE data scaling