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Crystal Structure of Zymomonas mobilis Glutaminyl Cyclase (monoclinic form)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2IWA PDB ENTRY 2IWA
Crystallization Crystal Properties Matthews coefficient Solvent content 2.57 52.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.38 α = 90 b = 85.04 β = 108.16 c = 64.86 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray IMAGE PLATE RIGAKU RAXIS IV++ confocal 2007-07-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 29 97.7 0.122 14.9 23164 -3 32.953
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.5 96.4 0.628 0.674 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2IWA 2.4 28.98 23145 1158 100 0.2029 0.1994 0.2014 0.2682 0.268 RANDOM 26.0348
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.54 0.63 -1.93 -1.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.543 r_dihedral_angle_3_deg 18.194 r_dihedral_angle_4_deg 17.805 r_dihedral_angle_1_deg 8.05 r_scangle_it 4.069 r_scbond_it 2.595 r_angle_refined_deg 1.829 r_mcangle_it 1.697 r_mcbond_it 0.909 r_chiral_restr 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.543 r_dihedral_angle_3_deg 18.194 r_dihedral_angle_4_deg 17.805 r_dihedral_angle_1_deg 8.05 r_scangle_it 4.069 r_scbond_it 2.595 r_angle_refined_deg 1.829 r_mcangle_it 1.697 r_mcbond_it 0.909 r_chiral_restr 0.11 r_bond_refined_d 0.02 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3794 Nucleic Acid Atoms Solvent Atoms 109 Heterogen Atoms 18
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection XDS data reduction