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Mycobacterium tuberculosis thioredoxin C C40S mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2I1U PDB Entry 2I1U
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.4 292 0.2M potassium thiocyanate, 2.2M ammonium sulphate, pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 3.1 60.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.269 α = 90 b = 75.269 β = 90 c = 96.028 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD ADSC QUANTUM 4 2004-04-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 0.931 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 27 99.9 0.062 0.062 33.5 18.7 40668 27.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB Entry 2I1U 1.6 26.97 40660 2037 99.95 0.18227 0.18051 0.1881 0.21615 0.2234 RANDOM 22.183
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.238 r_dihedral_angle_4_deg 22.65 r_dihedral_angle_3_deg 14.982 r_scangle_it 6.226 r_dihedral_angle_1_deg 5.803 r_scbond_it 3.906 r_mcangle_it 2.828 r_angle_refined_deg 2.678 r_mcbond_it 1.778 r_chiral_restr 0.213
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.238 r_dihedral_angle_4_deg 22.65 r_dihedral_angle_3_deg 14.982 r_scangle_it 6.226 r_dihedral_angle_1_deg 5.803 r_scbond_it 3.906 r_mcangle_it 2.828 r_angle_refined_deg 2.678 r_mcbond_it 1.778 r_chiral_restr 0.213 r_bond_refined_d 0.031 r_gen_planes_refined 0.013 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1611 Nucleic Acid Atoms Solvent Atoms 279 Heterogen Atoms 12
Software Software Software Name Purpose DNA data collection PHASES phasing REFMAC refinement MOSFLM data reduction SCALA data scaling