☰ Navigation Tabs
Crystal structure of a creatinine amidohydrolase (Npun_F1913) from Nostoc punctiforme PCC 73102 at 2.00 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.6 277 0.2000M (NH4)2Tartrate, 20.0000% PEG-3350, No Buffer pH 6.6, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.39 48.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.085 α = 90 b = 89.085 β = 90 c = 211.563 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD FLAT MIRROR (VERTICAL FOCUSING) 2009-12-03 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97939,0.97901 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 29.695 99.9 0.164 9.9 7.3 58475 20.76
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.05 99.9 0.943 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 29.695 58399 2955 100 0.153 0.151 0.1611 0.192 0.1989 RANDOM 28.72
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.15 1.15 -2.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.522 r_dihedral_angle_4_deg 17.489 r_dihedral_angle_3_deg 13.051 r_dihedral_angle_1_deg 6.297 r_scangle_it 3.217 r_scbond_it 2.078 r_angle_refined_deg 1.536 r_angle_other_deg 1.306 r_mcangle_it 1.188 r_mcbond_it 0.685
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.522 r_dihedral_angle_4_deg 17.489 r_dihedral_angle_3_deg 13.051 r_dihedral_angle_1_deg 6.297 r_scangle_it 3.217 r_scbond_it 2.078 r_angle_refined_deg 1.536 r_angle_other_deg 1.306 r_mcangle_it 1.188 r_mcbond_it 0.685 r_mcbond_other 0.204 r_chiral_restr 0.092 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5863 Nucleic Acid Atoms Solvent Atoms 581 Heterogen Atoms 76
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SOLVE phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction