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Crystal structure of armadillo repeats domain of APC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 287 25% PEG 3350, 180mM ammonium sulfate, pH 8.0, vapor diffusion, sitting drop, temperature 287K
Crystal Properties Matthews coefficient Solvent content 2.13 42.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.389 α = 90.31 b = 52.682 β = 89.95 c = 63.451 γ = 95.16
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD 2010-01-25 SAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.97916 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 50 95.1 0.075 13.3 1.9 165928
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 83.1 0.342 1.3 14470
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.6 50 2 78816 4173 94.91 0.16959 0.16789 0.1769 0.20112 0.2092 RANDOM 21.593
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.38 0.06 0.22 0.03 0.05 -0.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.192 r_dihedral_angle_4_deg 19.467 r_dihedral_angle_3_deg 15.617 r_scangle_it 6.153 r_dihedral_angle_1_deg 5.165 r_scbond_it 4.017 r_mcangle_it 2.621 r_mcbond_it 1.615 r_angle_refined_deg 1.417 r_chiral_restr 0.109
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.192 r_dihedral_angle_4_deg 19.467 r_dihedral_angle_3_deg 15.617 r_scangle_it 6.153 r_dihedral_angle_1_deg 5.165 r_scbond_it 4.017 r_mcangle_it 2.621 r_mcbond_it 1.615 r_angle_refined_deg 1.417 r_chiral_restr 0.109 r_gen_planes_refined 0.015 r_bond_refined_d 0.014 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5136 Nucleic Acid Atoms Solvent Atoms 680 Heterogen Atoms 10
Software Software Software Name Purpose SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction