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Mutant P169S of Foot-and-mouth disease Virus RNA dependent RNA-polymerase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1U09
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 298 35% PEG 4000, 0.2M magnesium acetate, 0.1M sodium acetate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.44 49.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.834 α = 90 b = 93.834 β = 90 c = 121.687 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2008-07-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.933 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 30 99.8 0.103 18.4 16296 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1U09 2.6 19.42 16296 869 99.17 0.22249 0.22052 0.2548 0.25983 0.2941 RANDOM 54.769
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.006 r_dihedral_angle_3_deg 14.706 r_dihedral_angle_4_deg 12.797 r_dihedral_angle_1_deg 4.323 r_angle_refined_deg 0.84 r_scangle_it 0.608 r_scbond_it 0.37 r_mcangle_it 0.368 r_nbtor_refined 0.292 r_mcbond_it 0.205
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.006 r_dihedral_angle_3_deg 14.706 r_dihedral_angle_4_deg 12.797 r_dihedral_angle_1_deg 4.323 r_angle_refined_deg 0.84 r_scangle_it 0.608 r_scbond_it 0.37 r_mcangle_it 0.368 r_nbtor_refined 0.292 r_mcbond_it 0.205 r_nbd_refined 0.166 r_symmetry_vdw_refined 0.143 r_xyhbond_nbd_refined 0.117 r_chiral_restr 0.056 r_symmetry_hbond_refined 0.051 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3704 Nucleic Acid Atoms 103 Solvent Atoms 45 Heterogen Atoms 1
Software Software Software Name Purpose MxCuBE data collection REFMAC refinement MOSFLM data reduction SCALA data scaling REFMAC phasing