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Crystal Structure of Salicylate 1,2-dioxygenase from Pseudoaminobacter salicylatoxidans Adducts with gentisate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8 277 8% PEG10000, pH 8.0, vapor diffusion, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.37 63.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.58 α = 90 b = 86.97 β = 90 c = 166.78 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2008-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 0.8123 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.155 83.39 97.2 0.058 0.058 16.6 4.2 29532 29532 30.74
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.155 2.27 94.4 0.307 0.307 2.5 3.8 4134
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.155 30 29437 1489 96.65 0.1639 0.1614 0.212 0.1902 RANDOM 31.1097
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.69 1.26 -1.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.197 r_dihedral_angle_4_deg 15.777 r_dihedral_angle_3_deg 14.671 r_dihedral_angle_1_deg 6.44 r_scangle_it 3.715 r_scbond_it 2.365 r_angle_refined_deg 1.497 r_mcangle_it 1.34 r_mcbond_it 0.723 r_chiral_restr 0.094
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.197 r_dihedral_angle_4_deg 15.777 r_dihedral_angle_3_deg 14.671 r_dihedral_angle_1_deg 6.44 r_scangle_it 3.715 r_scbond_it 2.365 r_angle_refined_deg 1.497 r_mcangle_it 1.34 r_mcbond_it 0.723 r_chiral_restr 0.094 r_bond_refined_d 0.015 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2866 Nucleic Acid Atoms Solvent Atoms 354 Heterogen Atoms 24
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction DNA data collection