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Crystal structure of AqpZ mutant F43W
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2O9F
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 25-30% PEG2000,100mM sodium cacodylate, 50-100mM MgCl2, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.51 64.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.424 α = 90 b = 92.424 β = 90 c = 78.819 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 103 CCD ADSC QUANTUM 210 monochrometer 2006-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 0.97949 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 92.45 95.4 0.074 0.074 15.4 3.2 24848 24848 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.4 2.53 86.6 0.699 0.699 1.1 2.9 3281
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 209F 2.4 19.99 24847 1264 95.27 0.1831 0.1812 0.1882 0.2203 0.2247 RANDOM 49.589
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 0.03 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.054 r_dihedral_angle_4_deg 21.568 r_dihedral_angle_3_deg 15.739 r_dihedral_angle_1_deg 6.161 r_scangle_it 2.91 r_scbond_it 1.985 r_angle_refined_deg 1.712 r_angle_other_deg 1.161 r_mcangle_it 1.135 r_mcbond_it 0.646
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.054 r_dihedral_angle_4_deg 21.568 r_dihedral_angle_3_deg 15.739 r_dihedral_angle_1_deg 6.161 r_scangle_it 2.91 r_scbond_it 1.985 r_angle_refined_deg 1.712 r_angle_other_deg 1.161 r_mcangle_it 1.135 r_mcbond_it 0.646 r_mcbond_other 0.192 r_chiral_restr 0.099 r_bond_refined_d 0.02 r_gen_planes_refined 0.01 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3356 Nucleic Acid Atoms Solvent Atoms 136 Heterogen Atoms 80
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction ELVES refinement ELVES data reduction