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The structure of UBR box (native1)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 295 0.1M HEPES pH 7.7, 70%(v/v) MPD, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 3.01 59.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.207 α = 90 b = 39.207 β = 90 c = 274.689 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAC Science DIP-2030 2008-10-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 6B 1.12713,1.28305,1.28325 PAL/PLS 6B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.52 50 94.2 0.091 9.3 17.3 4701
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.52 2.61 54.2 0.711 6.4 264
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.6 31.84 4194 199 98.45 0.2457 0.2439 0.2372 0.2841 0.263 RANDOM 68.843
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.68 1.34 2.68 -4.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.855 r_dihedral_angle_3_deg 15.934 r_dihedral_angle_4_deg 7.315 r_dihedral_angle_1_deg 5.131 r_scangle_it 1.331 r_angle_refined_deg 0.934 r_mcangle_it 0.859 r_scbond_it 0.778 r_mcbond_it 0.476 r_nbtor_refined 0.287
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.855 r_dihedral_angle_3_deg 15.934 r_dihedral_angle_4_deg 7.315 r_dihedral_angle_1_deg 5.131 r_scangle_it 1.331 r_angle_refined_deg 0.934 r_mcangle_it 0.859 r_scbond_it 0.778 r_mcbond_it 0.476 r_nbtor_refined 0.287 r_nbd_refined 0.187 r_symmetry_vdw_refined 0.154 r_xyhbond_nbd_refined 0.135 r_symmetry_hbond_refined 0.126 r_chiral_restr 0.063 r_bond_refined_d 0.007 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 690 Nucleic Acid Atoms Solvent Atoms 21 Heterogen Atoms 3
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing