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GYMLGS segment 127-132 from human prion with M129
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 0.2M Tris pH 7.0, vapor diffusion, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.56 21.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 18.15 α = 90 b = 9.553 β = 90 c = 45.163 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2006-11-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0048 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 90 90.9 0.186 9.4 5.4 1163
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.55 1.61 78.2 0.398 5.1 97
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.57 22.58 1146 120 90.31 0.2246 0.2213 0.2291 0.2528 0.2564 RANDOM 14.6467
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.17 -1.56 -0.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.637 r_sphericity_free 5.063 r_dihedral_angle_1_deg 4.976 r_scangle_it 4.937 r_dihedral_angle_2_deg 4.113 r_scbond_it 3.555 r_mcangle_it 2.218 r_sphericity_bonded 1.857 r_rigid_bond_restr 1.693 r_angle_refined_deg 1.541
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.637 r_sphericity_free 5.063 r_dihedral_angle_1_deg 4.976 r_scangle_it 4.937 r_dihedral_angle_2_deg 4.113 r_scbond_it 3.555 r_mcangle_it 2.218 r_sphericity_bonded 1.857 r_rigid_bond_restr 1.693 r_angle_refined_deg 1.541 r_mcbond_it 1.328 r_angle_other_deg 0.865 r_mcbond_other 0.402 r_chiral_restr 0.122 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 86 Nucleic Acid Atoms Solvent Atoms 4 Heterogen Atoms
Software Software Software Name Purpose SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction