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Nucleotide Binding Domain of human ABCB6 (apo structure)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2GHI PDB ENTRY 2GHI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 0.1M MES pH 6.5, 40% (v/v) PEG400, vapor diffusion, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.24 45.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.229 α = 90 b = 68.609 β = 90 c = 76.537 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2009-09-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.934 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 33.4 99.9 0.058 37.1 15.1 20985 20977 -3 39.675
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.15 100 5.2 12.2 4013
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2GHI 2 31.3 -3 20985 20970 1049 100 0.182 0.18 0.1802 0.239 0.2395 RANDOM 40.407
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.56 2.06 0.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.253 r_dihedral_angle_4_deg 19.712 r_dihedral_angle_3_deg 16.425 r_dihedral_angle_1_deg 5.693 r_scangle_it 4.097 r_scbond_it 2.494 r_angle_refined_deg 1.512 r_mcangle_it 1.47 r_mcbond_it 0.842 r_chiral_restr 0.115
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.253 r_dihedral_angle_4_deg 19.712 r_dihedral_angle_3_deg 16.425 r_dihedral_angle_1_deg 5.693 r_scangle_it 4.097 r_scbond_it 2.494 r_angle_refined_deg 1.512 r_mcangle_it 1.47 r_mcbond_it 0.842 r_chiral_restr 0.115 r_bond_refined_d 0.017 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2091 Nucleic Acid Atoms Solvent Atoms 139 Heterogen Atoms 8
Software Software Software Name Purpose MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction DNA data collection XDS data reduction XSCALE data scaling