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X-ray Structure of Omwaprin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 292 61% Tacsimate, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 1.81 31.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.09 α = 90 b = 46.558 β = 92.75 c = 39.65 γ = 90
Symmetry Space Group P 1 21/c 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2009-08-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.9795 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.33 50 97.1 0.079 25.5 12.7 35749 35749 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.33 1.38 80.1 0.383 2.5 6.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING THROUGHOUT 1.33 44.04 33231 1756 97.03 0.17602 0.17419 0.20979 0.232 RANDOM 13.228
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 -0.3 -0.19 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.392 r_sphericity_free 18.02 r_dihedral_angle_3_deg 10.967 r_dihedral_angle_4_deg 9.082 r_sphericity_bonded 8.065 r_scangle_it 7.616 r_dihedral_angle_1_deg 7.056 r_scbond_it 5.986 r_mcangle_it 5.332 r_mcbond_it 3.701
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.392 r_sphericity_free 18.02 r_dihedral_angle_3_deg 10.967 r_dihedral_angle_4_deg 9.082 r_sphericity_bonded 8.065 r_scangle_it 7.616 r_dihedral_angle_1_deg 7.056 r_scbond_it 5.986 r_mcangle_it 5.332 r_mcbond_it 3.701 r_rigid_bond_restr 3.613 r_mcbond_other 3.125 r_angle_other_deg 2.03 r_angle_refined_deg 1.947 r_chiral_restr 0.108 r_bond_refined_d 0.02 r_gen_planes_refined 0.011 r_gen_planes_other 0.009 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 714 Nucleic Acid Atoms Solvent Atoms 140 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection SHELXD phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling