☰ Navigation Tabs
Complex of 6-hydroxy-L-nicotine oxidase with intermediate methylmyosmine product formed during catalytic turnover
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 293 20mM Sodium phosphate; 4M sodium formiate, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.81 67.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 162.766 α = 90 b = 162.766 β = 90 c = 162.766 γ = 90
Symmetry Space Group P 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm MIRROR 2003-03-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 20 98.5 0.112 10 3 34405 2 34.45
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.33 97.1 0.725 2 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.25 12.22 33487 32985 1735 98.5 0.192 0.191 0.1971 0.227 0.2272 RANDOM 31.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.322 r_dihedral_angle_4_deg 19.058 r_dihedral_angle_3_deg 16.529 r_dihedral_angle_1_deg 7.046 r_scangle_it 6.053 r_scbond_it 4.097 r_mcangle_it 2.276 r_angle_refined_deg 2.203 r_mcbond_it 1.537 r_symmetry_vdw_refined 0.367
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.322 r_dihedral_angle_4_deg 19.058 r_dihedral_angle_3_deg 16.529 r_dihedral_angle_1_deg 7.046 r_scangle_it 6.053 r_scbond_it 4.097 r_mcangle_it 2.276 r_angle_refined_deg 2.203 r_mcbond_it 1.537 r_symmetry_vdw_refined 0.367 r_nbtor_refined 0.33 r_symmetry_hbond_refined 0.237 r_nbd_refined 0.232 r_xyhbond_nbd_refined 0.185 r_chiral_restr 0.154 r_bond_refined_d 0.027 r_gen_planes_refined 0.013 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3272 Nucleic Acid Atoms Solvent Atoms 458 Heterogen Atoms 122
Software Software Software Name Purpose MAR345 data collection MOLREP phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling